Description
collagen, type VI, alpha 3 [Source:HGNC Symbol;Acc:2213]
Location
Chromosome 2: 238,232,646-238,323,018 reverse strand.
GRCh37:CM000664.1
About this gene
This gene has 15 transcripts (splice variants), 9 paralogues and is associated with 6 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000295550.4 | COL6A3-001 | 10749 | 3177aa | ENSP00000295550.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33412 | D9ZGF2 P12111 Q8N4Z1 | NM_004369.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000347401.3 | COL6A3-202 | 9978 | 2976aa | ENSP00000315609.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ENL6 Q8N4Z1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000353578.4 | COL6A3-203 | 9963 | 2971aa | ENSP00000315873.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33409 | P12111 Q8N4Z1 | NM_057167.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000346358.4 | COL6A3-201 | 9219 | 2977aa | ENSP00000295546.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JNG9 E9PCV6 Q8N4Z1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000409809.1 | COL6A3-011 | 8916 | 2971aa | ENSP00000386844.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33409 | P12111 Q8N4Z1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000472056.1 | COL6A3-012 | 8628 | 2570aa | ENSP00000418285.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33410 | P12111 Q8N4Z1 | NM_057166.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000392004.3 | COL6A3-002 | 4037 | 1237aa | ENSP00000375861.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33411 | P12111 | NM_057165.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000392003.2 | COL6A3-003 | 3464 | 1036aa | ENSP00000375860.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54439 | P12111 | NM_057164.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000433762.1 | COL6A3-008 | 2379 | 708aa | ENSP00000389539.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JNG9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000491233.1 | COL6A3-004 | 652 | 173aa | ENSP00000460277.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L392 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000473258.1 | COL6A3-005 | 5433 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000493608.1 | COL6A3-006 | 742 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000491769.1 | COL6A3-009 | 6731 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000493475.2 | COL6A3-007 | 669 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000468792.1 | COL6A3-010 | 329 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
