Description
sequestosome 1 [Source:HGNC Symbol;Acc:11280]
Gene Synonyms
A170, ORCA, OSIL, PDB3, ZIP3, p60, p62, p62B
Location
Chromosome 5: 179,233,388-179,265,078 forward strand.
GRCh37:CM000667.1
About this gene
This gene has 17 transcripts (splice variants) and is associated with 6 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000389805.4 | SQSTM1-001 | 2986 | 440aa | ENSP00000374455.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS34317 | C9JRJ8 E9PFW8 Q13501 | NM_003900.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000376929.3 | SQSTM1-201 | 2913 | 356aa | ENSP00000366128.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | NM_001142299.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000360718.5 | SQSTM1-002 | 2253 | 356aa | ENSP00000353944.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000402874.3 | SQSTM1-202 | 2000 | 356aa | ENSP00000385553.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000510187.1 | SQSTM1-013 | 1714 | 378aa | ENSP00000424477.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 E7EMC7 E9PFW8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000514093.1 | SQSTM1-015 | 842 | 167aa | ENSP00000427308.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 E9PFW8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000422245.1 | SQSTM1-003 | 628 | 140aa | ENSP00000394534.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000504627.1 | SQSTM1-017 | 602 | 190aa | ENSP00000425957.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E3W990 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000508284.1 | SQSTM1-016 | 578 | 69aa | ENSP00000424195.1 | Nonsense mediated decay | D6RBF1 | - | - | |
| ENST00000453046.1 | SQSTM1-008 | 572 | 73aa | ENSP00000405061.1 | Nonsense mediated decay | C9J6J8 D6RBF1 | - | - | |
| ENST00000506690.1 | SQSTM1-010 | 2405 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000512234.1 | SQSTM1-011 | 1722 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000506042.1 | SQSTM1-014 | 921 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000481335.1 | SQSTM1-004 | 562 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000464493.1 | SQSTM1-005 | 532 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000466342.1 | SQSTM1-007 | 808 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000485412.1 | SQSTM1-006 | 656 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
