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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPATA6 ENSG00000132122

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Description

spermatogenesis associated 6 [Source:HGNC Symbol;Acc:18309]

Gene Synonyms

FLJ10007, HASH, SRF-1, SRF1

Location

Chromosome 1: 48,761,044-48,937,845 reverse strand.

GRCh37:CM000663.1

About this gene

This gene has 11 transcripts (splice variants) and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371847.3	SPATA6-001	4973	488aa	ENSP00000360913.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS551	Q9NWH7	NM_019073.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371843.3	SPATA6-002	2297	472aa	ENSP00000360909.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65535	Q9NWH7	NM_001286238.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396199.3	SPATA6-201	1635	416aa	ENSP00000379502.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MU33	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371841.1	SPATA6-005	818	249aa	ENSP00000360907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AN51	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000603831.1	SPATA6-010	1218	164aa	ENSP00000474844.1	Nonsense mediated decay		S4R3X9	-	-
ENST00000487543.1	SPATA6-007	599	86aa	ENSP00000474642.1	Nonsense mediated decay		S4R3R3	-	-
ENST00000463938.1	SPATA6-003	1038	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490850.1	SPATA6-004	897	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471975.2	SPATA6-008	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487629.1	SPATA6-006	462	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465990.1	SPATA6-009	293	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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