Description
sperm antigen with calponin homology and coiled-coil domains 1 [Source:HGNC Symbol;Acc:30615]
Gene Synonyms
CYTSB, FLJ36955, HCMOGT-1, HCMOGT1, NSP, NSP5
Location
Chromosome 17: 19,912,657-20,222,339 forward strand.
GRCh37:CM000679.1
About this gene
This gene has 24 transcripts (splice variants), 13 paralogues and is associated with 78 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000395530.2 | SPECC1-004 | 8133 | 987aa | ENSP00000378901.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS42281 | B4DQ24 F5H2Z1 J3QQM0 Q5M775 | NM_001033555.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000395529.3 | SPECC1-002 | 4971 | 790aa | ENSP00000378900.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS42280 | J3KRB9 J3KRD8 J3KS18 J3KTI9 J3QQM0 J3QRQ9 J3QS22 J3QSD6 Q5M775 | NM_152904.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000261503.5 | SPECC1-018 | 3948 | 1068aa | ENSP00000261503.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32590 | B4DQ24 F5H2Z1 J3KRB9 J3KRD8 J3KS18 J3KTI9 J3QQM0 J3QRQ9 J3QS22 J3QSD6 Q5M775 | NM_001033553.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000395527.4 | SPECC1-027 | 3363 | 1068aa | ENSP00000378898.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32590 | B4DQ24 F5H2Z1 J3KRB9 J3KRD8 J3KS18 J3KTI9 J3QQM0 J3QRQ9 J3QS22 J3QSD6 Q5M775 | NM_001243439.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000395522.2 | SPECC1-003 | 2982 | 703aa | ENSP00000378893.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58531 | J3QQM0 Q5M775 | NM_001243438.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000395525.3 | SPECC1-026 | 2536 | 709aa | ENSP00000378896.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45628 | J3QQM0 Q5M775 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000581399.1 | SPECC1-001 | 2249 | 534aa | ENSP00000462471.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3QQM0 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000536879.1 | SPECC1-201 | 1725 | 408aa | ENSP00000438294.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H2Z1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000584527.1 | SPECC1-028 | 940 | 202aa | ENSP00000463799.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3QQM0 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000582226.1 | SPECC1-029 | 732 | 167aa | ENSP00000462092.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000581973.2 | SPECC1-016 | 674 | 102aa | ENSP00000464341.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRB9 J3KRD8 J3KS18 J3KTI9 J3QRQ9 J3QSD6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000582604.1 | SPECC1-015 | 662 | 21aa | ENSP00000464639.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KS18 J3QSD6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000583463.1 | SPECC1-020 | 581 | 132aa | ENSP00000464489.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRB9 J3KRD8 J3KS18 J3KTI9 J3QRQ9 J3QS22 J3QSD6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000583528.1 | SPECC1-024 | 571 | 78aa | ENSP00000461918.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRB9 J3KRD8 J3KS18 J3QSD6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000583482.2 | SPECC1-025 | 570 | 101aa | ENSP00000463006.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRB9 J3KRD8 J3KS18 J3KTI9 J3QSD6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000580934.1 | SPECC1-017 | 462 | 73aa | ENSP00000461944.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRD8 J3KS18 J3QSD6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000578321.1 | SPECC1-014 | 433 | 19aa | ENSP00000462266.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KS18 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000578153.1 | SPECC1-021 | 195 | 46aa | ENSP00000462987.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000467722.2 | SPECC1-008 | 731 | 25aa | ENSP00000463130.1 | Nonsense mediated decay | J3QKL1 | - | - | |
| ENST00000472876.1 | SPECC1-006 | 614 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000582063.1 | SPECC1-012 | 580 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000413167.2 | SPECC1-007 | 574 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000579688.1 | SPECC1-010 | 461 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000492188.1 | SPECC1-005 | 1190 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
