Gene: COL9A1 ENSG00000112280

Description

collagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:2217]

Gene Synonyms

DJ149L1.1.2, EDM6, MED, STL4

Location

Chromosome 6: 70,924,764-71,012,786 reverse strand.

GRCh37:CM000668.1

About this gene

This gene has 11 transcripts (splice variants), 9 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357250.6	COL9A1-001	4761	921aa	ENSP00000349790.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4971	P20849	NM_001851.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000320755.7	COL9A1-002	3059	678aa	ENSP00000315252.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47447	P20849	NM_078485.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370499.4	COL9A1-201	2893	678aa	ENSP00000359530.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NEQ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370496.3	COL9A1-004	1372	328aa	ENSP00000359527.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P20849	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489611.1	COL9A1-009	1940	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486080.1	COL9A1-008	1844	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000360859.6	COL9A1-010	699	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000447041.2	COL9A1-007	690	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493682.2	COL9A1-005	1117	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470652.1	COL9A1-003	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489861.2	COL9A1-006	243	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: COL9A1 ENSG00000112280

Summary