Description
tropomyosin 3 [Source:HGNC Symbol;Acc:12012]
Gene Synonyms
CAPM1, CFTD, NEM1, OK/SW-cl.5, TM-5, TM3, TM30, TM30nm, TM5, TPMsk3, TRK, hscp30
Location
Chromosome 1: 154,127,784-154,167,124 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 22 transcripts (splice variants), 3 paralogues and is associated with 64 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000368530.2 | TPM3-001 | 1523 | 285aa | ENSP00000357516.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS41403 | D6RGJ6 P06753 Q5VU62 | NM_152263.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000368533.3 | TPM3-004 | 3131 | 248aa | ENSP00000357521.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1060 | P06753 Q6LDX7 Q8NI98 | NM_153649.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000330188.9 | TPM3-009 | 2108 | 248aa | ENSP00000339035.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS41400 | P06753 Q5VU63 | NM_001043353.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000341485.5 | TPM3-003 | 2063 | 232aa | ENSP00000341653.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5HYB6 Q6LDX7 Q8NI98 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000341372.3 | TPM3-005 | 2007 | 223aa | ENSP00000339378.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DWT5 Q5VU61 Q6LDX7 Q8NI98 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000328159.4 | TPM3-006 | 1771 | 248aa | ENSP00000357520.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS60275 | Q5VU58 Q6LDX7 Q8TCG3 | NM_001278189.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000271850.7 | TPM3-015 | 1219 | 285aa | ENSP00000271850.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RGJ6 J3KN67 Q6LDX7 Q8NI98 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000368531.2 | TPM3-026 | 1115 | 247aa | ENSP00000357517.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS41402 | P06753 Q6LDX7 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000323144.7 | TPM3-010 | 1088 | 247aa | ENSP00000357518.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS41401 | P06753 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000302206.5 | TPM3-011 | 741 | 158aa | ENSP00000307712.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS60274 | Q5VU63 | NM_001278191.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000515609.1 | TPM3-018 | 587 | 75aa | ENSP00000426306.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RGJ6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000509409.1 | TPM3-016 | 1248 | 49aa | ENSP00000426521.1 | Nonsense mediated decay | D6RFM2 | - | - | |
| ENST00000509601.1 | TPM3-020 | 543 | 95aa | ENSP00000422207.1 | Nonsense mediated decay | D6R904 | - | - | |
| ENST00000469717.1 | TPM3-008 | 4041 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000312970.8 | TPM3-022 | 750 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000368527.3 | TPM3-019 | 569 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000466010.1 | TPM3-013 | 461 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000368545.3 | TPM3-014 | 2147 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000504663.1 | TPM3-025 | 870 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000473036.2 | TPM3-021 | 746 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000505010.1 | TPM3-023 | 540 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000513769.1 | TPM3-024 | 539 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
