Gene: ATG4D ENSG00000130734

Description

autophagy related 4D, cysteine peptidase [Source:HGNC Symbol;Acc:20789]

Gene Synonyms

APG4-D, APG4D, AUTL4

Location

Chromosome 19: 10,654,571-10,664,094 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 13 transcripts (splice variants), 259 orthologues, 3 paralogues and is associated with 1 phenotype.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000309469.4	ATG4D-001	1949	474aa	ENSP00000311318.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12241	K7EKP6 Q86TL0 Q969K0	NM_032885.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540862.1	ATG4D-201	930	141aa	ENSP00000441375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q969K0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588972.1	ATG4D-010	632	177aa	ENSP00000466759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EN30	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000586477.1	ATG4D-007	628	209aa	ENSP00000467223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EP43	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000587256.1	ATG4D-009	607	203aa	ENSP00000468780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000586863.1	ATG4D-008	529	177aa	ENSP00000465089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000585437.1	ATG4D-011	377	99aa	ENSP00000467694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQ67	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000586417.1	ATG4D-002	1752	160aa	ENSP00000467906.1	Nonsense mediated decay		K7EQN3	-	-
ENST00000588667.1	ATG4D-005	1619	228aa	ENSP00000467407.1	Nonsense mediated decay		K7EKP6 K7EPJ0	-	-
ENST00000588857.1	ATG4D-003	1555	334aa	ENSP00000468290.1	Nonsense mediated decay		K7EKP6 K7ERK1	-	-
ENST00000589753.1	ATG4D-006	931	67aa	ENSP00000466439.1	Nonsense mediated decay		K7EMB9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000585752.1	ATG4D-012	729	120aa	ENSP00000465716.1	Nonsense mediated decay		K7EKP6	-	-
ENST00000590096.1	ATG4D-004	1282	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: ATG4D ENSG00000130734

Summary