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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FOXA1 ENSG00000129514

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Description

forkhead box A1 [Source:HGNC Symbol;Acc:5021]

Gene Synonyms

HNF3A, TCF3A

Location

Chromosome 14: 38,059,189-38,069,245 reverse strand.

GRCh37:CM000676.1

About this gene

This gene has 6 transcripts (splice variants), 23 paralogues and is associated with 53 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000250448.2	FOXA1-001	2862	472aa	ENSP00000250448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9665	B7ZAP5 P55317	NM_004496.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540786.1	FOXA1-201	1792	439aa	ENSP00000440178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZAP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553751.1	FOXA1-003	507	36aa	ENSP00000451704.1	Nonsense mediated decay		G3V4B9	-	-
ENST00000545425.2	FOXA1-002	1806	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554607.1	FOXA1-004	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557418.1	FOXA1-005	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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