Description
TAR DNA binding protein [Source:HGNC Symbol;Acc:11571]
Gene Synonyms
ALS10, TDP-43, TDP43
Location
Chromosome 1: 11,072,414-11,085,796 forward strand.
GRCh37:CM000663.1
About this gene
This gene has 10 transcripts (splice variants), 3 paralogues and is associated with 3 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000240185.3 | TARDBP-001 | 2748 | 414aa | ENSP00000240185.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS122 | K7EJM5 Q13148 | NM_007375.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000315091.3 | TARDBP-003 | 1835 | 295aa | ENSP00000313129.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1AKP7 K7EJM5 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000439080.2 | TARDBP-201 | 1357 | 298aa | ENSP00000404666.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DJ45 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000476201.1 | TARDBP-005 | 767 | 222aa | ENSP00000466842.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EN94 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000473118.1 | TARDBP-004 | 688 | 201aa | ENSP00000465240.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EJM5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000473869.1 | TARDBP-002 | 1946 | 298aa | ENSP00000432132.1 | Nonsense mediated decay | G3V162 K7EJM5 | - | - | |
| ENST00000472476.1 | TARDBP-006 | 929 | 80aa | ENSP00000465080.1 | Nonsense mediated decay | K7EJ99 | - | - | |
| ENST00000496840.1 | TARDBP-008 | 692 | 16aa | ENSP00000467020.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000477447.2 | TARDBP-007 | 311 | 65aa | ENSP00000465888.2 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000480464.1 | TARDBP-009 | 491 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - |
