Description
SEC22 vesicle trafficking protein homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:16828]
Gene Synonyms
MGC13261, MGC5373, SEC22L3
Location
Chromosome 3: 42,589,461-42,642,572 reverse strand.
GRCh37:CM000665.1
About this gene
This gene has 17 transcripts (splice variants), 195 orthologues and 10 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000264454.3 | SEC22C-002 | 1380 | 303aa | ENSP00000264454.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2700 | C9J2R1 C9J448 C9J9A4 Q9BRL7 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000451653.1 | SEC22C-003 | 5955 | 225aa | ENSP00000415969.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000273156.7 | SEC22C-001 | 1608 | 250aa | ENSP00000273156.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2699 | C9J2R1 C9J448 C9J9A4 F5H0H7 Q9BRL7 | NM_032970.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000417572.1 | SEC22C-005 | 1513 | 250aa | ENSP00000407564.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2699 | C9J2R1 C9J448 C9J9A4 F5H0H7 Q9BRL7 | NM_001201572.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000423701.2 | SEC22C-004 | 1458 | 228aa | ENSP00000414576.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56246 | C9J2R1 C9J9A4 Q9BRL7 | NM_001201584.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000536332.1 | SEC22C-201 | 1446 | 180aa | ENSP00000439845.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H0H7 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000456515.1 | SEC22C-008 | 872 | 236aa | ENSP00000391170.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J2R1 C9J448 C9J9A4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000450981.1 | SEC22C-010 | 721 | 142aa | ENSP00000397170.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J2R1 C9J9A4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000420163.1 | SEC22C-015 | 553 | 75aa | ENSP00000408242.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JNW1 F8WBN1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000416880.1 | SEC22C-013 | 527 | 107aa | ENSP00000391957.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J9A4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000449617.1 | SEC22C-006 | 1446 | 143aa | ENSP00000389589.1 | Nonsense mediated decay | F8WBN1 F8WDR5 | - | - | |
| ENST00000445388.1 | SEC22C-011 | 823 | 72aa | ENSP00000404987.1 | Nonsense mediated decay | F8VQT7 F8WBN1 | - | - | |
| ENST00000454141.1 | SEC22C-012 | 780 | 61aa | ENSP00000411725.1 | Nonsense mediated decay | F8WBN1 | - | - | |
| ENST00000383750.4 | SEC22C-009 | 752 | 72aa | ENSP00000373256.4 | Nonsense mediated decay | F8VQT7 F8WBN1 | - | - | |
| ENST00000493107.1 | SEC22C-007 | 827 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000456222.1 | SEC22C-016 | 558 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000487701.1 | SEC22C-014 | 729 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
