Description
prominin 1 [Source:HGNC Symbol;Acc:9454]
Gene Synonyms
AC133, CD133, CORD12, MCDR2, PROML1, RP41, STGD4
Location
Chromosome 4: 15,964,699-16,086,001 reverse strand.
GRCh37:CM000666.1
About this gene
This gene has 21 transcripts (splice variants), 1 paralogue and is associated with 10 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000510224.1 | PROM1-004 | 4006 | 865aa | ENSP00000426809.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47029 | D6RBI0 D6RIF3 O43490 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000505450.1 | PROM1-001 | 4349 | 856aa | ENSP00000426090.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54746 | D6RBI0 D6RIF3 O43490 | NM_001145848.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000508167.1 | PROM1-003 | 4014 | 856aa | ENSP00000427346.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54746 | D6RBI0 D6RIF3 O43490 | NM_001145847.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000447510.2 | PROM1-201 | 3977 | 865aa | ENSP00000415481.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47029 | D6RBI0 D6RIF3 O43490 | NM_006017.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000540805.1 | PROM1-203 | 3908 | 842aa | ENSP00000438045.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54748 | D6RBI0 D6RIF3 O43490 | NM_001145851.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000539194.1 | PROM1-202 | 3884 | 834aa | ENSP00000443620.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54747 | D6RBI0 D6RIF3 O43490 | NM_001145852.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000543373.1 | PROM1-204 | 2773 | 830aa | ENSP00000445526.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBI0 D6RIF3 O43490 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000513946.1 | PROM1-018 | 581 | 93aa | ENSP00000424738.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000514967.1 | PROM1-011 | 568 | 14aa | ENSP00000423793.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000508940.1 | PROM1-009 | 567 | 40aa | ENSP00000422704.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBI0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000508322.1 | PROM1-010 | 551 | 57aa | ENSP00000425927.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBI0 D6RIF3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000511153.1 | PROM1-005 | 1595 | 54aa | ENSP00000424569.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000503884.1 | PROM1-019 | 622 | 65aa | ENSP00000423860.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000502943.1 | PROM1-007 | 760 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000502501.1 | PROM1-008 | 568 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000513108.1 | PROM1-014 | 565 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000512304.2 | PROM1-012 | 540 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000514693.1 | PROM1-015 | 530 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000504842.1 | PROM1-013 | 507 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000511270.1 | PROM1-017 | 291 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000513448.1 | PROM1-002 | 2042 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
