Description
vacuolar protein sorting 41 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:12713]
Gene Synonyms
HVPS41, HVSP41, hVps41p
Location
Chromosome 7: 38,762,563-38,971,994 reverse strand.
GRCh37:CM000669.1
About this gene
This gene has 14 transcripts (splice variants) and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000310301.4 | VPS41-001 | 5903 | 854aa | ENSP00000309457.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5457 | C9J2U9 P49754 Q75MS2 | NM_014396.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000395969.2 | VPS41-002 | 3181 | 829aa | ENSP00000379297.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5458 | E9PF36 Q75MS1 Q9H348 | NM_080631.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000413141.1 | VPS41-012 | 575 | 156aa | ENSP00000412974.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JU58 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000414632.1 | VPS41-003 | 548 | 177aa | ENSP00000411919.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J2U9 C9J3F8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000418457.2 | VPS41-014 | 532 | 104aa | ENSP00000407835.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J2U9 C9JZ11 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000457055.1 | VPS41-013 | 465 | 73aa | ENSP00000398584.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J2U9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000439468.1 | VPS41-006 | 354 | 109aa | ENSP00000395410.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C0K2 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000265745.9 | VPS41-010 | 769 | 209aa | ENSP00000265745.9 | Nonsense mediated decay | C9J2U9 H7BXH3 Q75MS2 | - | - | |
| ENST00000448833.1 | VPS41-004 | 711 | 150aa | ENSP00000391980.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000466017.1 | VPS41-011 | 591 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000485955.1 | VPS41-009 | 571 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000482217.1 | VPS41-007 | 951 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000490924.1 | VPS41-005 | 496 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000462429.1 | VPS41-008 | 347 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
