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    Sequence and assembly

    Sequence

      Markers

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        • Tilepath
          BAC clones upon which the current genomic assembly was based. Colours indicate a finished sequence (gold clones), phase 1 sequencing (dark pink), phase 0 (light pink) or other (grey). Clones that have been fluorescence in situ hybridisation (FISH) mapped are marked with a black triangle in the top left corner. If a clone is shown in outline, the mapping to the genome is problematic and the true length may not be displayed.

        Genes and transcripts

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        • Basic Gene Annotations from GENCODE 19
          The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

        Variation

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          Somatic mutations

            Information and decorations

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            • Chromosome bands
              Cytogenetic bands
            • Scale bar ()
              Shows the scalebar
            • Ruler ()
              Shows the length of the region being displayed
            • Disabled track summary ()
            • Information ()
            • Gene Legend
            • Alignment Difference Legend
            • Variant Legend
            • Structural Variant Legend
            • Display in-track labels
            • Highlight current feature

            Display options

            Looking for more data? Search the Trackhub Registry for external sources of annotation

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