In early 2020 we are planning to remove all data other than for human from this archive website. If you think this will impact you please read our blog post for full details.

EnsemblEnsembl Home

How can I export sequence?

Export individual sequences or whole genome alignments using the Export data button at the left of the gene, transcript, or location page. A video describes this. Alternatively, export in batch using BioMart. Perls programmers can use our Perl-API to access all Ensembl data. Sequences can be exported via our REST API as well. See here for more.


If you have any other questions about Ensembl, please do not hesitate to contact our HelpDesk. You may also like to subscribe to the developers' mailing list.