Transcript: ENST00000599649.1 SIGLEC5-002

Gene Synonyms

CD170, CD33L2, OB-BP2, OBBP2, SIGLEC-5

Location

Chromosome 19: 52,115,344-52,150,053 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 26 domains and features, is associated with 14955 variant alleles and maps to 391 oligo probes.

Gene

This transcript is a product of gene ENSG00000268500.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq	Flags
ENST00000429354.3	SIGLEC5-001	1926	551aa	ENSP00000415200.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000599649.1	SIGLEC5-002	1837	551aa	ENSP00000470259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,837 bps, Translation length: 551 residues

Version

ENST00000599649.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs8108078, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-LWK, ESP6500:African_American, CSHL-HAPMAP:HapMap-YRI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000466952 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000599649.1 SIGLEC5-002

Summary