Transcript: ENST00000579578.2 PNLIPRP2-005

Description

pancreatic lipase-related protein 2 [Source:HGNC Symbol;Acc:9157]

Gene Synonyms

PLRP2

Location

Chromosome HG311_PATCH: 118,380,818-118,404,609 forward strand.

About this transcript

This transcript has 12 exons, is associated with 11592 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000266200.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq	Flags
ENST00000591655.1	PNLIPRP2-004	1589	356aa	ENSP00000468117.1	Nonsense mediated decay	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000579578.2	PNLIPRP2-005	1410	469aa	ENSP00000463502.2	Pseudogene owing to a SNP/indel but in other individuals/haplotypes/strains the gene is translated.Polymorphic pseudogene	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588823.1	PNLIPRP2-003	622	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENST00000586762.1	PNLIPRP2-001	590	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENST00000589989.1	PNLIPRP2-002	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,410 bps, Translation length: 469 residues

Version

ENST00000579578.2

Type

Polymorphic pseudogene

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs4751995, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-CEU, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-ASW, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000460053 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000579578.2 PNLIPRP2-005

Summary