Transcript: ENST00000518882.1 PCDHGA11-003

Description

protocadherin gamma subfamily A, 11 [Source:HGNC Symbol;Acc:8698]

Gene Synonyms

PC43, PCDH-GAMMA-A11, PCDH-GAMMA-C3, PCDH2

Location

About this transcript

This transcript has 4 exons, is annotated with 45 domains and features, is associated with 40933 variant alleles and maps to 233 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398587.2	PCDHGA11-001	3936	935aa	ENSP00000381589.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47294	Q9BT64 Q9UKW1 Q9Y5H2	NM_032092.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518882.1	PCDHGA11-003	2260	750aa	ENSP00000428333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54930	Q9BT64 Q9UKW1 Q9Y5H2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,260 bps, Translation length: 750 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5H2

CCDS

This transcript is a member of the Human CCDS set: CCDS54930

Version

ENST00000518882.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000376976 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.