Transcript: ENST00000546304.1 PRKDC-007

Description

protein kinase, DNA-activated, catalytic polypeptide [Source:HGNC Symbol;Acc:9413]

Gene Synonyms

DNA-PKcs, DNAPK, DNPK1, HYRC, HYRC1, XRCC7, p350

Location

Chromosome 8: 48,774,930-48,777,353 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1089 variant alleles and maps to 76 oligo probes.

Gene

This transcript is a product of gene ENSG00000253729.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000314191.2	PRKDC-201	13506	4127aa	ENSP00000313420.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5GX40 P78527	NM_006904.6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338368.3	PRKDC-202	13413	4096aa	ENSP00000345182.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EUY0 F5GX40	NM_001081640.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536429.1	PRKDC-010	659	90aa	ENSP00000442177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540819.1	PRKDC-005	537	70aa	ENSP00000441157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5GX40	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523565.1	PRKDC-002	13508	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000518216.1	PRKDC-001	12783	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000521331.1	PRKDC-004	1087	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000536483.1	PRKDC-011	834	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000541488.1	PRKDC-003	719	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000546304.1	PRKDC-007	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000432581.2	PRKDC-008	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000536710.1	PRKDC-009	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000535375.1	PRKDC-006	464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 589 bps,

Version

ENST00000546304.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000397418 (version 1)

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Transcript: ENST00000546304.1 PRKDC-007

Summary