Transcript: ENST00000399429.3 COL28A1-001

Description

collagen, type XXVIII, alpha 1 [Source:HGNC Symbol;Acc:22442]

Gene Synonyms

COL28

Location

Chromosome 7: 7,397,506-7,575,484 reverse strand.

About this transcript

This transcript has 35 exons, is annotated with 42 domains and features, is associated with 84977 variant alleles and maps to 789 oligo probes.

Gene

This transcript is a product of gene ENSG00000215018.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399429.3	COL28A1-001	4277	1125aa	ENSP00000382356.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43553	H7BZU0 H7C3P2 Q2UY09	NM_001037763.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453441.1	COL28A1-006	700	80aa	ENSP00000391380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZU0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435823.1	COL28A1-004	678	130aa	ENSP00000410557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q2UY09	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000430711.1	COL28A1-005	2323	142aa	ENSP00000413093.1	Nonsense mediated decay		H7BZU0 H7C3P2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000444268.1	COL28A1-002	1755	67aa	ENSP00000408401.1	Nonsense mediated decay		Q2UY09	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465339.1	COL28A1-003	722	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 35, Coding exons: 34, Transcript length: 4,277 bps, Translation length: 1,125 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q2UY09

CCDS

This transcript is a member of the Human CCDS set: CCDS43553

Version

ENST00000399429.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000315899 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000399429.3 COL28A1-001

Summary