Transcript: ENST00000506275.1 ITGA1-004

Description

integrin, alpha 1 [Source:HGNC Symbol;Acc:6134]

Gene Synonyms

CD49a, VLA1

Location

Chromosome 5: 52,226,982-52,252,321 forward strand.

About this transcript

This transcript has 7 exons, is associated with 10548 variant alleles and maps to 519 oligo probes.

Gene

This transcript is a product of gene ENSG00000213949.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282588.6	ITGA1-001	10757	1179aa	ENSP00000282588.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3955	P56199	NM_181501.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504086.1	ITGA1-002	1366	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513737.1	ITGA1-005	601	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514262.1	ITGA1-006	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509049.1	ITGA1-007	437	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506275.1	ITGA1-004	7461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504669.1	ITGA1-003	6276	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 7,461 bps,

Version

ENST00000506275.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000367727 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000506275.1 ITGA1-004

Summary