Transcript: ENST00000475993.1 ABCF1-005

Description

ATP-binding cassette, sub-family F (GCN20), member 1 [Source:HGNC Symbol;Acc:70]

Gene Synonyms

ABC27, ABC50, EST123147

Location

Chromosome 6: 30,550,242-30,564,956 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 24 domains and features, is associated with 6519 variant alleles and maps to 2363 oligo probes.

Gene

This transcript is a product of gene ENSG00000204574.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326195.8	ABCF1-001	3481	845aa	ENSP00000313603.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34380	F5GYK6 Q8NE71	NM_001025091.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376545.3	ABCF1-002	3131	807aa	ENSP00000365728.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34381	F5GYK6 Q2L6I2 Q8NE71	NM_001090.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396515.4	ABCF1-201	1641	238aa	ENSP00000379772.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5STZ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441867.1	ABCF1-003	1074	339aa	ENSP00000405512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYK6 Q5STZ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468958.1	ABCF1-006	606	105aa	ENSP00000440893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000475993.1	ABCF1-005	2860	596aa	ENSP00000445100.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000479542.1	ABCF1-007	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542772.1	ABCF1-008	223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 2,860 bps, Translation length: 596 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000475993.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000256168 (version 2)

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Transcript: ENST00000475993.1 ABCF1-005

Summary