Transcript: ENST00000375001.3 COL15A1-001

Description

collagen, type XV, alpha 1 [Source:HGNC Symbol;Acc:2192]

Location

About this transcript

This transcript has 42 exons, is annotated with 33 domains and features, is associated with 54932 variant alleles and maps to 1113 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375001.3	COL15A1-001	5491	1388aa	ENSP00000364140.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35081	P39059	NM_001855.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467052.1	COL15A1-002	276	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471477.1	COL15A1-004	1412	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496686.1	COL15A1-003	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 42, Coding exons: 42, Transcript length: 5,491 bps, Translation length: 1,388 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P39059

CCDS

This transcript is a member of the Human CCDS set: CCDS35081

Version

ENST00000375001.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000053386 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.