Transcript: ENST00000485983.2 SRGAP3-004

Description

SLIT-ROBO Rho GTPase activating protein 3 [Source:HGNC Symbol;Acc:19744]

Gene Synonyms

ARHGAP14, KIAA0411, KIAA1156, MEGAP, SRGAP2, WRP

Location

Chromosome 3: 9,075,115-9,122,971 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 21376 variant alleles and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSG00000196220.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000383836.3	SRGAP3-001	8656	1099aa	ENSP00000373347.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2572	O43295	NM_014850.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360413.3	SRGAP3-002	8415	1075aa	ENSP00000353587.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33689	O43295	NM_001033117.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433332.3	SRGAP3-010	2222	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518265.1	SRGAP3-011	1799	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490348.1	SRGAP3-006	1554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475560.1	SRGAP3-008	703	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490889.2	SRGAP3-013	622	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480750.3	SRGAP3-009	552	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520860.1	SRGAP3-012	422	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485983.2	SRGAP3-004	5677	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470951.1	SRGAP3-005	2334	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491467.1	SRGAP3-007	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 5,677 bps,

Version

ENST00000485983.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000338074 (version 2)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000485983.2 SRGAP3-004

Summary