Transcript: ENST00000485407.1 NHLRC3-004

Description

NHL repeat containing 3 [Source:HGNC Symbol;Acc:33751]

Gene Synonyms

RP11-50D16.3

Location

Chromosome 13: 39,616,195-39,618,601 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1086 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSG00000188811.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379600.3	NHLRC3-005	3549	347aa	ENSP00000368920.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31961	C9J973 Q5JS37	NM_001012754.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470258.1	NHLRC3-001	3298	150aa	ENSP00000418127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J973	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379599.2	NHLRC3-002	3275	280aa	ENSP00000368919.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31962	C9J973 Q5JS37	NM_001017370.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473371.1	NHLRC3-003	3237	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485407.1	NHLRC3-004	623	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 623 bps,

Version

ENST00000485407.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000044615 (version 1)

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Transcript: ENST00000485407.1 NHLRC3-004

Summary