Transcript: ENST00000494294.1 LCN10-005

Description

lipocalin 10 [Source:HGNC Symbol;Acc:20892]

Location

Chromosome 9: 139,632,619-139,636,456 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2054 variant alleles and maps to 299 oligo probes.

Gene

This transcript is a product of gene ENSG00000187922.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000497771.1	LCN10-001	723	200aa	ENSP00000418491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35182	E9PRR3 Q6JVE6	NM_001001712.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527229.1	LCN10-006	615	164aa	ENSP00000431726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PK15 E9PRR3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474369.1	LCN10-002	564	187aa	ENSP00000420564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PRR3 Q6JVE6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341040.7	LCN10-003	1780	86aa	ENSP00000435948.1	Nonsense mediated decay		E9PRR3	-	-
ENST00000529013.1	LCN10-010	570	37aa	ENSP00000431930.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000532006.1	LCN10-007	443	75aa	ENSP00000434410.1	Nonsense mediated decay		E9PQQ7	-	-
ENST00000406721.3	LCN10-004	3262	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494294.1	LCN10-005	2505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,505 bps,

Version

ENST00000494294.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000055105 (version 1)

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Transcript: ENST00000494294.1 LCN10-005

Summary