Transcript: ENST00000423517.2 PCLO-011

Description

piccolo presynaptic cytomatrix protein [Source:HGNC Symbol;Acc:13406]

Gene Synonyms

ACZ, DKFZp779G1236, KIAA0559

Location

Chromosome 7: 82,449,796-82,792,246 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 76 domains and features, is associated with 157243 variant alleles and maps to 863 oligo probes.

Gene

This transcript is a product of gene ENSG00000186472.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333891.9	PCLO-001	20329	5142aa	ENSP00000334319.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47630	Q9Y6V0	NM_033026.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423517.2	PCLO-011	17144	4935aa	ENSP00000388393.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47631	Q9Y6V0	NM_014510.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437081.1	PCLO-003	3786	1217aa	ENSP00000393760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PE96 Q6ZU41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413807.2	PCLO-008	748	46aa	ENSP00000404191.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000456006.2	PCLO-007	451	60aa	ENSP00000397928.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000426442.2	PCLO-004	1684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000432078.2	PCLO-010	476	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461143.1	PCLO-009	428	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 17,144 bps, Translation length: 4,935 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y6V0

CCDS

This transcript is a member of the Human CCDS set: CCDS47631

Version

ENST00000423517.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000377249 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000423517.2 PCLO-011

Summary