Transcript: ENST00000366898.1 PARK2-004

Description

parkin RBR E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:8607]

Gene Synonyms

AR-JP, LPRS2, PDJ, PRKN, parkin

Location

Chromosome 6: 161,768,452-163,148,803 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 23 domains and features, is associated with 639232 variant alleles and maps to 625 oligo probes.

Gene

This transcript is a product of gene ENSG00000185345.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366898.1	PARK2-004	4180	465aa	ENSP00000355865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5281	M4T2U2 O60260 Q5XNR7 Q6Q2I8 Q6S8G7	NM_004562.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366897.1	PARK2-005	2877	437aa	ENSP00000355863.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5282	M4T2U2 O60260 Q5VVX4 Q5XNR7 Q6Q2I8 Q6S8G7 S4X465	NM_013987.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366896.1	PARK2-006	2514	316aa	ENSP00000355862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5283	M4T2U2 O60260 Q6Q2I8	NM_013988.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366892.1	PARK2-002	1505	368aa	ENSP00000355858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKC3 Q5XNR7 Q6Q2I8 Q6S8G7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338468.3	PARK2-003	1276	274aa	ENSP00000343589.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M4T2U2 O60260 Q6Q2I8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366894.1	PARK2-001	1157	274aa	ENSP00000355860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M4T2U2 O60260 Q6Q2I8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479615.1	PARK2-007	904	218aa	ENSP00000434414.1	Nonsense mediated decay		O60260 Q6Q2I8 Q6S8G7	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 4,180 bps, Translation length: 465 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60260

CCDS

This transcript is a member of the Human CCDS set: CCDS5281

Version

ENST00000366898.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000042995 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000366898.1 PARK2-004

Summary