Transcript: ENST00000542942.1 GALNT9-005

Description

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) [Source:HGNC Symbol;Acc:4131]

Gene Synonyms

GALNAC-T9, GALNACT9

Location

Chromosome 12: 132,688,052-132,690,347 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 2 domains and features, is associated with 1587 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSG00000182870.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397325.2	GALNT9-001	1720	237aa	ENSP00000380488.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41866	F5H317 F5H557 Q9HCQ5	NM_021808.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000328957.8	GALNT9-009	2410	603aa	ENSP00000329846.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KP58 F5H317 F5H557 J3KNN1	NM_001122636.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411988.2	GALNT9-006	1727	376aa	ENSP00000394446.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KNR7 F5H317 F5H557	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000535228.1	GALNT9-201	1727	354aa	ENSP00000439745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KNR7 F5H317 F5H557	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541995.1	GALNT9-002	1001	237aa	ENSP00000440544.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41866	F5H317 F5H557 Q9HCQ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538356.1	GALNT9-004	897	96aa	ENSP00000444709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H317 F5H557	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542942.1	GALNT9-005	624	54aa	ENSP00000438221.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H317	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535208.1	GALNT9-008	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000424720.2	GALNT9-010	1693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540493.1	GALNT9-007	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 624 bps, Translation length: 54 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000542942.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000398989 (version 1)

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Transcript: ENST00000542942.1 GALNT9-005

Summary