Transcript: ENST00000531163.1 SCRIB-008

Description

scribbled planar cell polarity protein [Source:HGNC Symbol;Acc:30377]

Gene Synonyms

CRIB1, KIAA0147, LAP4, SCRB1, SCRIB1, VARTUL, Vartul

Location

Chromosome 8: 144,873,095-144,873,712 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 356 variant alleles and maps to 270 oligo probes.

Gene

This transcript is a product of gene ENSG00000180900.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356994.2	SCRIB-002	5218	1655aa	ENSP00000349486.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6412	Q14160	NM_182706.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000320476.3	SCRIB-001	5143	1630aa	ENSP00000322938.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6411	Q14160	NM_015356.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377533.3	SCRIB-003	5108	1549aa	ENSP00000366756.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q14160	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526832.1	SCRIB-004	2189	650aa	ENSP00000431519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000531942.1	SCRIB-007	421	140aa	ENSP00000433546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YDF9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000546337.1	SCRIB-009	516	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525051.1	SCRIB-005	1685	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531163.1	SCRIB-008	538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 538 bps,

Version

ENST00000531163.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000382216 (version 1)

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Transcript: ENST00000531163.1 SCRIB-008

Summary