Transcript: ENST00000474266.1 RPS6KA3-004

Description

ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Source:HGNC Symbol;Acc:10432]

Gene Synonyms

CLS, HU-3, ISPK-1, ISPK1, MAPKAPK1B, MRX19, RSK, RSK2, S6K-alpha3, p90-RSK2, pp90RSK2

Location

Chromosome X: 20,221,480-20,236,988 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 4246 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSG00000177189.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379565.3	RPS6KA3-001	7918	740aa	ENSP00000368884.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14197	B1AXG2 B7ZB17 P51812 Q7Z2J3 Q7Z2J4	NM_004586.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544447.1	RPS6KA3-203	3054	712aa	ENSP00000440220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AXG2 B7ZB17 Q7Z2J3 Q7Z2J4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540702.1	RPS6KA3-202	2425	711aa	ENSP00000444837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AXG2 B4DG22 Q7Z2J3 Q7Z2J4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379548.4	RPS6KA3-201	2410	710aa	ENSP00000368865.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AXG1 F5GYC4 Q7Z2J3 Q7Z2J4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457145.1	RPS6KA3-002	804	227aa	ENSP00000407655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AXG1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000438357.1	RPS6KA3-003	530	133aa	ENSP00000388512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AXG2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479809.1	RPS6KA3-005	847	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492128.1	RPS6KA3-006	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474266.1	RPS6KA3-004	930	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 930 bps,

Version

ENST00000474266.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000056014 (version 2)

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Transcript: ENST00000474266.1 RPS6KA3-004

Summary