Transcript: ENST00000311601.5 SH3PXD2B-001

Description

SH3 and PX domains 2B [Source:HGNC Symbol;Acc:29242]

Gene Synonyms

FAD49, FLJ20831, FTHS, HOFI, KIAA1295, TKS4, TSK4

Location

About this transcript

This transcript has 13 exons, is annotated with 31 domains and features, is associated with 54738 variant alleles and maps to 517 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311601.5	SH3PXD2B-001	7777	911aa	ENSP00000309714.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34291	A1X283	NM_001017995.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519643.1	SH3PXD2B-002	1394	430aa	ENSP00000430890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V144	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518522.1	SH3PXD2B-004	471	81aa	ENSP00000428076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000523651.1	SH3PXD2B-005	390	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 7,777 bps, Translation length: 911 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A1X283

CCDS

This transcript is a member of the Human CCDS set: CCDS34291

Version

ENST00000311601.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000372449 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.