Transcript: ENST00000369510.4 VANGL1-001

Description

VANGL planar cell polarity protein 1 [Source:HGNC Symbol;Acc:15512]

Gene Synonyms

KITENIN, LPP2, STB2, STBM2

Location

Chromosome 1: 116,184,612-116,240,845 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 24579 variant alleles and maps to 662 oligo probes.

Gene

This transcript is a product of gene ENSG00000173218.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355485.2	VANGL1-201	8691	524aa	ENSP00000347672.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS883	Q8TAA9	NM_138959.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369510.4	VANGL1-001	8647	522aa	ENSP00000358523.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53350	Q8TAA9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310260.3	VANGL1-003	2265	524aa	ENSP00000310800.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS883	Q8TAA9	NM_001172412.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369509.1	VANGL1-002	2062	524aa	ENSP00000358522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS883	Q8TAA9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474344.1	VANGL1-005	461	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478369.1	VANGL1-004	363	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 8,647 bps, Translation length: 522 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TAA9

CCDS

This transcript is a member of the Human CCDS set: CCDS53350

Version

ENST00000369510.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000033094 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000369510.4 VANGL1-001

Summary