Transcript: ENST00000417862.2 TTC40-004

Description

tetratricopeptide repeat domain 40 [Source:HGNC Symbol;Acc:25247]

Gene Synonyms

C10orf123, C10orf124, C10orf92, C10orf93, DKFZp434A1721, FLJ25954, RP13-137A17.3, bA288G11.4, bA288G11.5, bB137A17.2, bB137A17.3

Location

Chromosome 10: 134,686,032-134,690,412 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1724 variant alleles and maps to 77 oligo probes.

Gene

This transcript is a product of gene ENSG00000171811.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368586.5	TTC40-001	8278	2715aa	ENSP00000357575.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58101	Q8IYW2	NM_001200049.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368582.2	TTC40-202	4694	1530aa	ENSP00000357571.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QTL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263170.5	TTC40-201	2745	876aa	ENSP00000263170.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368585.3	TTC40-008	1825	405aa	ENSP00000357574.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IYW2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448925.1	TTC40-002	610	153aa	ENSP00000417039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486104.1	TTC40-006	1675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475340.1	TTC40-009	1156	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466834.1	TTC40-005	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476633.1	TTC40-007	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000417862.2	TTC40-004	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 394 bps,

Version

ENST00000417862.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000051097 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000417862.2 TTC40-004

Summary