Transcript: ENST00000532149.1 CHD7-009

Description

chromodomain helicase DNA binding protein 7 [Source:HGNC Symbol;Acc:20626]

Gene Synonyms

FLJ20357, FLJ20361, HH5, IS3, KAL5, KIAA1416

Location

Chromosome 8: 61,774,503-61,777,692 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1586 variant alleles and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSG00000171316.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000423902.2	CHD7-001	10446	2997aa	ENSP00000392028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47865	E9PP20 H0YDC1 Q9P2D1	NM_017780.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525508.1	CHD7-003	4777	1138aa	ENSP00000436027.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP20 H0YDC1 Q9P2D1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524602.1	CHD7-002	3456	948aa	ENSP00000437061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP20 H0YDC1 Q9P2D1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526846.1	CHD7-004	500	32aa	ENSP00000436492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP20	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000527825.1	CHD7-012	434	19aa	ENSP00000432627.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000527900.1	CHD7-005	398	39aa	ENSP00000433336.1	Nonsense mediated decay		H0YDC1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000529472.1	CHD7-007	788	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527921.1	CHD7-006	527	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532149.1	CHD7-009	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528280.1	CHD7-010	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531695.1	CHD7-008	507	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 616 bps,

Version

ENST00000532149.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000383478 (version 1)

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Transcript: ENST00000532149.1 CHD7-009

Summary