Transcript: ENST00000453333.1 SEMA3E-003

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:10727]

Gene Synonyms

KIAA0331, M-SEMAH, M-SemaK, SEMAH, coll-5

Location

About this transcript

This transcript has 3 exons, is annotated with 2 domains and features, is associated with 70302 variant alleles and maps to 102 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307792.3	SEMA3E-001	6476	775aa	ENSP00000303212.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34674	C9JVH5 F8WCZ5 O15041	NM_012431.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427262.1	SEMA3E-002	2414	715aa	ENSP00000405052.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55121	C9JVH5 O15041	NM_001178129.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442159.3	SEMA3E-004	626	163aa	ENSP00000412867.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JVH5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000453333.1	SEMA3E-003	571	39aa	ENSP00000415184.1	Nonsense mediated decay		F8WCZ5	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 571 bps, Translation length: 39 residues

Version

ENST00000453333.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000342240 (version 1)