Transcript: ENST00000578428.1 DUS1L-014

Description

dihydrouridine synthase 1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:30086]

Gene Synonyms

DUS1, PP3111

Location

Chromosome 17: 80,016,363-80,018,179 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1142 variant alleles and maps to 210 oligo probes.

Gene

This transcript is a product of gene ENSG00000169718.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354321.7	DUS1L-002	2151	473aa	ENSP00000346280.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32775	J3QLE4 Q6P1R4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000306796.5	DUS1L-001	2068	473aa	ENSP00000303515.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32775	J3QLE4 Q6P1R4	NM_022156.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538833.2	DUS1L-005	1250	298aa	ENSP00000445110.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582529.1	DUS1L-006	1212	309aa	ENSP00000463509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLE4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578907.1	DUS1L-009	1084	301aa	ENSP00000463962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQZ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542088.2	DUS1L-013	1040	239aa	ENSP00000438718.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578176.1	DUS1L-007	937	247aa	ENSP00000463180.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKP9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577907.1	DUS1L-008	648	152aa	ENSP00000463797.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQL9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577574.1	DUS1L-016	473	152aa	ENSP00000462812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580731.1	DUS1L-011	725	191aa	ENSP00000462526.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578846.1	DUS1L-004	4456	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578264.1	DUS1L-010	1071	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582407.1	DUS1L-012	714	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578428.1	DUS1L-014	688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584871.1	DUS1L-017	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000579854.1	DUS1L-015	657	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 688 bps,

Version

ENST00000578428.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442356 (version 1)

Annotation Attributes

retained intron CDS [Definitions]

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Transcript: ENST00000578428.1 DUS1L-014

Summary