Transcript: ENST00000517515.1 COL22A1-006

Description

collagen, type XXII, alpha 1 [Source:HGNC Symbol;Acc:22989]

Location

Chromosome 8: 139,837,962-139,840,348 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 1090 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSG00000169436.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303045.6	COL22A1-001	6346	1626aa	ENSP00000303153.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6376	Q8NFW1	NM_152888.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435777.1	COL22A1-201	6285	1606aa	ENSP00000387655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8NFW1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522546.1	COL22A1-007	554	65aa	ENSP00000428244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAX7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000341807.4	COL22A1-003	3584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487854.1	COL22A1-004	697	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517515.1	COL22A1-006	661	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484387.1	COL22A1-002	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 661 bps,

Version

ENST00000517515.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000377692 (version 1)

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Transcript: ENST00000517515.1 COL22A1-006

Summary