Transcript: ENST00000304990.8 COL4A3-004

Description

collagen, type IV, alpha 3 (Goodpasture antigen) [Source:HGNC Symbol;Acc:2204]

Location

Chromosome 2: 228,153,874-228,158,920 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 2424 variant alleles and maps to 109 oligo probes.

Gene

This transcript is a product of gene ENSG00000169031.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396578.3	COL4A3-001	8097	1670aa	ENSP00000379823.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42829	A9QVI3 Q01955 Q548X1	NM_000091.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304990.8	COL4A3-004	910	156aa	ENSP00000302781.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXM4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000468753.1	COL4A3-005	660	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469504.1	COL4A3-002	521	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471862.1	COL4A3-006	755	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487633.1	COL4A3-003	524	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 910 bps, Translation length: 156 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000304990.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331455 (version 1)

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Transcript: ENST00000304990.8 COL4A3-004

Summary