Transcript: ENST00000302787.2 LETM1-001

Description

leucine zipper-EF-hand containing transmembrane protein 1 [Source:HGNC Symbol;Acc:6556]

Location

Chromosome 4: 1,813,206-1,857,974 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 19 domains and features, is associated with 22848 variant alleles and maps to 739 oligo probes.

Gene

This transcript is a product of gene ENSG00000168924.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000302787.2	LETM1-001	5462	739aa	ENSP00000305653.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3355	D3DVQ1 O95202	NM_012318.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512189.1	LETM1-005	320	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505551.1	LETM1-003	2710	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466175.1	LETM1-002	1626	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512669.1	LETM1-004	966	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511977.1	LETM1-006	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510940.1	LETM1-007	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 5,462 bps, Translation length: 739 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95202

CCDS

This transcript is a member of the Human CCDS set: CCDS3355

Version

ENST00000302787.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000241634 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000302787.2 LETM1-001

Summary