Transcript: ENST00000587905.1 LDLRAD4-010

Description

low density lipoprotein receptor class A domain containing 4 [Source:HGNC Symbol;Acc:1224]

Gene Synonyms

C18orf1

Location

Chromosome 18: 13,218,025-13,621,142 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 172724 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSG00000168675.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361205.4	LDLRAD4-201	8686	306aa	ENSP00000354753.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32793	K7EJM9 K7EKD6 K7EMG1 O15165	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399848.3	LDLRAD4-001	8633	288aa	ENSP00000382741.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32794	K7EJM9 K7EKD6 K7EMG1 O15165	NM_181482.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359446.5	LDLRAD4-002	8486	306aa	ENSP00000352420.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32793	K7EJM9 K7EKD6 K7EMG1 O15165	NM_181481.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587757.1	LDLRAD4-003	2171	269aa	ENSP00000466178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32795	K7EMG1 O15165	NM_001003674.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585931.1	LDLRAD4-004	2118	229aa	ENSP00000466772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62392	K7EMG1 O15165	NM_001276249.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592991.1	LDLRAD4-008	1640	208aa	ENSP00000466771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62393	K7EN38	NM_001276251.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586765.1	LDLRAD4-018	844	251aa	ENSP00000474783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42415	K7EMG1 O15165	NM_001003675.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587905.1	LDLRAD4-010	743	69aa	ENSP00000465244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJM9 K7EKD6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586222.1	LDLRAD4-012	685	43aa	ENSP00000465573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKD6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000593236.1	LDLRAD4-013	572	34aa	ENSP00000466490.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EMG1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000590308.1	LDLRAD4-005	3720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590371.1	LDLRAD4-009	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592812.1	LDLRAD4-019	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586207.1	LDLRAD4-015	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592657.1	LDLRAD4-017	464	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587600.1	LDLRAD4-014	444	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587440.1	LDLRAD4-016	335	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000361303.3	LDLRAD4-006	8086	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000435606.1	LDLRAD4-007	8032	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590115.1	LDLRAD4-011	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 743 bps, Translation length: 69 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000587905.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000458323 (version 1)

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Transcript: ENST00000587905.1 LDLRAD4-010

Summary