Transcript: ENST00000373482.2 PBX3-010

Description

pre-B-cell leukemia homeobox 3 [Source:HGNC Symbol;Acc:8634]

Location

Chromosome 9: 128,509,733-128,728,269 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 3 domains and features, is associated with 89940 variant alleles and maps to 467 oligo probes.

Gene

This transcript is a product of gene ENSG00000167081.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373489.5	PBX3-006	2502	434aa	ENSP00000362588.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6865	P40426 U3KQA2	NM_006195.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373487.4	PBX3-007	2902	455aa	ENSP00000362586.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JS98 Q96AL5 U3KQA2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000342287.5	PBX3-001	2755	351aa	ENSP00000341990.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P40426 U3KQA2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447726.2	PBX3-002	1723	359aa	ENSP00000387456.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48021	P40426 U3KQA2	NM_001134778.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373483.2	PBX3-201	1063	253aa	ENSP00000362582.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P40426	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491787.3	PBX3-009	875	160aa	ENSP00000475679.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQA2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000428092.1	PBX3-008	528	176aa	ENSP00000397903.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000373482.2	PBX3-010	1130	93aa	ENSP00000362581.2	Nonsense mediated decay		H3BLX0	-	-
ENST00000373492.2	PBX3-005	950	93aa	ENSP00000362591.2	Nonsense mediated decay		H3BLX0	-	-
ENST00000538998.1	PBX3-013	1035	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491160.1	PBX3-014	679	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497091.1	PBX3-003	425	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492314.3	PBX3-015	607	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 1,130 bps, Translation length: 93 residues

Version

ENST00000373482.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000054106 (version 2)

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Transcript: ENST00000373482.2 PBX3-010

Summary