Transcript: ENST00000493886.1 VCP-005

Description

valosin containing protein [Source:HGNC Symbol;Acc:12666]

Gene Synonyms

ALS14, HEL-220, HEL-S-70, IBMPFD, IBMPFD1, TERA, p97

Location

Chromosome 9: 35,056,867-35,072,546 reverse strand.

About this transcript

This transcript has 16 exons, is associated with 7899 variant alleles and maps to 749 oligo probes.

Gene

This transcript is a product of gene ENSG00000165280.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358901.6	VCP-001	4370	806aa	ENSP00000351777.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6573	C9IZA5 C9JUP7 P55072 Q0IIN5 Q96IF9 Q9NTC4	NM_007126.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448530.1	VCP-006	950	160aa	ENSP00000392088.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZA5 C9JUP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417448.1	VCP-004	722	115aa	ENSP00000399456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JUP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493886.1	VCP-005	2942	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480327.1	VCP-007	884	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479300.1	VCP-003	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466100.1	VCP-002	508	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 0, Transcript length: 2,942 bps,

Version

ENST00000493886.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000052294 (version 2)

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Transcript: ENST00000493886.1 VCP-005

Summary