Transcript: ENST00000448530.1 VCP-006

Description

valosin containing protein [Source:HGNC Symbol;Acc:12666]

Gene Synonyms

ALS14, HEL-220, HEL-S-70, IBMPFD, IBMPFD1, TERA, p97

Location

Chromosome 9: 35,064,243-35,072,624 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 11 domains and features, is associated with 4488 variant alleles and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSG00000165280.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358901.6	VCP-001	4370	806aa	ENSP00000351777.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6573	C9IZA5 C9JUP7 P55072 Q0IIN5 Q96IF9 Q9NTC4	NM_007126.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448530.1	VCP-006	950	160aa	ENSP00000392088.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZA5 C9JUP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417448.1	VCP-004	722	115aa	ENSP00000399456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JUP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493886.1	VCP-005	2942	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480327.1	VCP-007	884	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479300.1	VCP-003	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466100.1	VCP-002	508	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 950 bps, Translation length: 160 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000448530.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000052295 (version 3)

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Transcript: ENST00000448530.1 VCP-006

Summary