Transcript: ENST00000472806.1 CCDC171-007

Description

coiled-coil domain containing 171 [Source:HGNC Symbol;Acc:29828]

Gene Synonyms

C9orf93, Em:AL513423.1, FLJ39267, FLJ46740, bA536D16.1, bA778P13.1

Location

Chromosome 9: 15,887,793-15,920,332 forward strand.

About this transcript

This transcript has 3 exons, is associated with 18787 variant alleles and maps to 98 oligo probes.

Gene

This transcript is a product of gene ENSG00000164989.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380701.3	CCDC171-001	6512	1326aa	ENSP00000370077.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6481	Q6TFL3 Q8NCV3	NM_173550.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000297641.3	CCDC171-201	4097	1229aa	ENSP00000297641.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6TFL3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535968.1	CCDC171-202	4017	317aa	ENSP00000438838.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z3F8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449575.2	CCDC171-003	2628	469aa	ENSP00000409055.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000432954.1	CCDC171-008	2181	257aa	ENSP00000399526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486641.2	CCDC171-004	2322	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470191.1	CCDC171-005	838	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478913.1	CCDC171-009	764	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498725.1	CCDC171-006	498	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472806.1	CCDC171-007	478	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474193.1	CCDC171-002	363	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 478 bps,

Version

ENST00000472806.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000055521 (version 1)

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Transcript: ENST00000472806.1 CCDC171-007

Summary