Transcript: ENST00000296946.2 T-001

Description

T, brachyury homolog (mouse) [Source:HGNC Symbol;Acc:11515]

Gene Synonyms

TFT

Location

About this transcript

This transcript has 9 exons, is annotated with 21 domains and features, is associated with 5720 variant alleles and maps to 409 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296946.2	T-001	2436	435aa	ENSP00000296946.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5290	H0YM91 O15178	NM_003181.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366871.3	T-002	2250	377aa	ENSP00000355836.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59045	H0YM91 O15178	NM_001270484.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366876.2	T-003	1497	403aa	ENSP00000355841.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM91 J3KP65	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000461348.2	T-004	902	243aa	ENSP00000453512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM91	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,436 bps, Translation length: 435 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15178

CCDS

This transcript is a member of the Human CCDS set: CCDS5290

Version

ENST00000296946.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000043037 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.