Transcript: ENST00000514335.1 NIPBL-005

Description

Nipped-B homolog (Drosophila) [Source:HGNC Symbol;Acc:28862]

Gene Synonyms

CDLS, CDLS1, DKFZp434L1319, FLJ11203, FLJ12597, FLJ13354, FLJ13648, IDN3, IDN3-B, Scc2

Location

Chromosome 5: 37,051,045-37,065,604 forward strand.

About this transcript

This transcript has 7 exons, is associated with 6294 variant alleles and maps to 461 oligo probes.

Gene

This transcript is a product of gene ENSG00000164190.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282516.8	NIPBL-001	10435	2804aa	ENSP00000282516.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3920	A2RRA7 Q6KC79	NM_133433.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448238.2	NIPBL-002	8729	2697aa	ENSP00000406266.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47198	Q6KC79	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513819.1	NIPBL-008	452	150aa	ENSP00000421504.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8M3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000504430.1	NIPBL-004	3455	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505998.1	NIPBL-003	969	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503274.1	NIPBL-007	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509429.1	NIPBL-006	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514335.1	NIPBL-005	2948	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 2,948 bps,

Version

ENST00000514335.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000366962 (version 1)

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Transcript: ENST00000514335.1 NIPBL-005

Summary