Transcript: ENST00000471739.1 FYCO1-005

Description

FYVE and coiled-coil domain containing 1 [Source:HGNC Symbol;Acc:14673]

Gene Synonyms

CATC2, CTRCT18, FLJ13335, RUFY3, ZFYVE7

Location

Chromosome 3: 46,026,073-46,037,316 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 4196 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSG00000163820.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296137.2	FYCO1-001	8504	1478aa	ENSP00000296137.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2734	C9J2W6 Q9BQS8	NM_024513.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535325.1	FYCO1-201	4635	1498aa	ENSP00000441178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZKT7 C9J2W6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433878.1	FYCO1-003	4317	267aa	ENSP00000388136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2W6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000438446.1	FYCO1-006	1072	149aa	ENSP00000398517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2W6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471739.1	FYCO1-005	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 545 bps,

Version

ENST00000471739.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000344605 (version 1)

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Transcript: ENST00000471739.1 FYCO1-005

Summary