Transcript: ENST00000319592.4 RBM47-201

Description

RNA binding motif protein 47 [Source:HGNC Symbol;Acc:30358]

Gene Synonyms

FLJ20273, NET18

Location

Chromosome 4: 40,425,272-40,631,883 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 91038 variant alleles and maps to 698 oligo probes.

Gene

This transcript is a product of gene ENSG00000163694.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381793.2	RBM47-001	4816	593aa	ENSP00000371212.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43223	A0AV96 B7Z8Z7 D6R9M7 D6RA49 D6RBP6 D6RBS9 D6RCT1 D6REZ6 D6RFL5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319592.4	RBM47-201	4934	524aa	ENSP00000320108.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3460	A0AV96 D6R9M7 D6RA49 D6RBP6 D6RBS9 D6RCT1 D6REZ6 D6RFL5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381795.6	RBM47-002	4473	524aa	ENSP00000371214.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3460	A0AV96 D6R9M7 D6RA49 D6RBP6 D6RBS9 D6RCT1 D6REZ6 D6RFL5	NM_019027.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295971.7	RBM47-006	4056	593aa	ENSP00000295971.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43223	A0AV96 B7Z8Z7 D6R9M7 D6RA49 D6RBP6 D6RBS9 D6RCT1 D6REZ6 D6RFL5	NM_001098634.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514014.1	RBM47-005	2419	555aa	ENSP00000423243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z8Z7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515053.1	RBM47-011	1100	217aa	ENSP00000422564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9M7 D6RA49 D6RBP6 D6RBS9 D6RCT1 D6REZ6 D6RFL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000513473.1	RBM47-015	882	193aa	ENSP00000421589.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9M7 D6RA49 D6RBP6 D6RCT1 D6REZ6 D6RFL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505414.1	RBM47-009	856	158aa	ENSP00000423527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9M7 D6RA49 D6RBP6 D6RCT1 D6RFL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511598.1	RBM47-008	836	113aa	ENSP00000424019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBP6 D6RCT1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514782.1	RBM47-013	797	137aa	ENSP00000426542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA49 D6RBP6 D6RCT1 D6RFL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505220.1	RBM47-010	741	59aa	ENSP00000425507.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCT1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511902.1	RBM47-012	657	59aa	ENSP00000425111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCT1	-	-
ENST00000507180.1	RBM47-014	582	123aa	ENSP00000423398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA49 D6RBP6 D6RCT1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510871.1	RBM47-007	4951	393aa	ENSP00000422945.1	Nonsense mediated decay		D6R9D6 D6R9M7 D6RA49 D6RBP6 D6RBS9 D6RCT1 D6REZ6 D6RFL5	-	-
ENST00000515809.1	RBM47-016	229	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513044.1	RBM47-004	2118	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 4,934 bps, Translation length: 524 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0AV96

CCDS

This transcript is a member of the Human CCDS set: CCDS3460

Version

ENST00000319592.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000319592.4 RBM47-201

Summary