Transcript: ENST00000475790.1 MEGF6-004

Description

multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:3232]

Gene Synonyms

EGFL3, KIAA0815

Location

Chromosome 1: 3,409,203-3,412,578 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 2020 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSG00000162591.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356575.4	MEGF6-007	5455	1541aa	ENSP00000348982.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41237	O75095	NM_001409.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000294599.4	MEGF6-001	4501	1229aa	ENSP00000294599.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75095	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491842.1	MEGF6-005	743	248aa	ENSP00000420386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000485002.2	MEGF6-002	4705	1323aa	ENSP00000419033.2	Nonsense mediated decay		H7C557	-	-
ENST00000494257.1	MEGF6-003	1174	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475790.1	MEGF6-004	883	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461795.1	MEGF6-006	418	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 883 bps,

Version

ENST00000475790.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000001548 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000475790.1 MEGF6-004

Summary