Transcript: ENST00000397927.3 COL26A1-002

Description

collagen, type XXVI, alpha 1 [Source:HGNC Symbol;Acc:18038]

Gene Synonyms

EMI6, EMID2, EMU2, Emu2, SH2B

Location

About this transcript

This transcript has 13 exons, is associated with 92088 variant alleles and maps to 581 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000313669.7	COL26A1-201	3007	440aa	ENSP00000318234.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPW4	NM_133457.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397927.3	COL26A1-002	3032	441aa	ENSP00000381022.3	Pseudogene owing to a SNP/indel but in other individuals/haplotypes/strains the gene is translated.Polymorphic pseudogene	CCDS64739	Q96A83	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528707.1	COL26A1-001	2969	439aa	ENSP00000434167.1	Pseudogene owing to a SNP/indel but in other individuals/haplotypes/strains the gene is translated.Polymorphic pseudogene		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473628.1	COL26A1-003	522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 3,032 bps, Translation length: 441 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96A83

CCDS

This transcript is a member of the Human CCDS set: CCDS64739

Version

ENST00000397927.3

Type

Polymorphic pseudogene

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000315898 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.